| Name | Description |
|---|---|
| 2mosaic | setup two almost overlapping lattices into one lattice and a double mosaic description |
| 2view | compare 2 rmat files. Syntax: 2view xxx.rmat yyy.rmat |
| anafcf | read fcf file, and create various analysis plots. |
| any | read reflection files from EVAL14 and EVAL15. Statistics, reflection filters, create pk and reflection files. |
| builddatcol | create scripts to build boxfiles |
| buildeval15 | create initial scripts with parameters for EVAL15 |
| buildimagemerge | create script to merge (fine-sliced) images |
| buildrest | create scripts for search of peaks not-fitting an already found lattice. |
| buildscc | extract scan information of image headers. To be used by scanplot. |
| buildsearch | create scripts for peak search. |
| cell | print/modify rmatfile |
| cnt2ccp4 | convert cnt file to CCP4 map |
| dirax | find unit cell from a set of peaks. |
| eval14all | run EVAL14 for all .shoe files. Creates final.y(.gz) |
| eval14 | EVAL14 integration program. |
| eval15all | run EVAL15 for all .shoe files. Creates final.y(.gz) |
| eval15 | EVAL15 integration program. |
| extractshoe | extract a subset of reflections from boxfiles |
| imagesum | various image tools. |
| img2r | merge images into cnt file. |
| loglog | compare two reflection files |
| low3 | create low-image |
| many | GUI for any |
| mbuildeval15 | GUI for buildeval15 |
| mdirax | GUI for dirax |
| mergedirax | merge various drx files into one drx file |
| mergehklf5 | |
| mergey | merge various .y-files into one big .y-file |
| meval14 | GUI to create and tune xtal.evc file for integration with EVAL14 |
| meval15 | GUI for eval15 |
| mpeakref | GUI for peakref |
| mproteinsetup | GUI for proteinsetup |
| queueclean | cleanup after batch processing of eval15 |
| queuesetup | setup batch processing of eval15 |
| queuestart | submit batch jobs for eval15 |
| queuewait | monitor batch jobs for eval15 |
| mrenameimages | GUI for renameimages |
| mview | GUI for view |
| peakref | refine cell- and experimental parameters |
| proteinsetup | set initial scripts with protein defaults |
| renameimages | rename image names into systematical names |
| rmat2pdb | convert rmatfile to pdb |
| rmatrix | cell reduction program rmatrix xxx.rmat [axcrit=0.3] [write=yyy.rmat] |
| sadabs | scaling program |
| scancheck | create table with image information per scan |
| scanplot | draws an animation of goniostat and detector movements. |
| splitimages | split one scan into two scans. |
| tunebeamstop | gui (on top of view) to build beamstop.vic |
| view | general image viewer. Capable of peak search and boxfile creation. |
|
Context overview Example: thaumatin |
\ commands Style |